Xia, Z, Wen, J, Chang CC, and Zhou, X*, NSMAP: A Method for Spliced Isoforms Identification and Quantification from RNA-Seq, BMC Bioinformatics, 2011, 12:162
Zhang, L, Jiang, BN, Wu, YK, Strouthos, C., Su, J., Sun, Z., and Zhou, X*, Developing a multi-scale, multi-resolution agent-based brain tumor model by graphics processing units, Journal of Theoretical Biology and Medical Modeling, 2011, 8:46 doi:10.1186/1742-4682-8-46.
Ito, M., Zhao, NX, Zeng, ZH, Zhou, X, Chang, CC, and Zu, YL, Interleukin-2 Functions in Anaplastic Large Cell Lymphoma Cells through Augmentation of Extracellular Signal-Regulated Kinases 1/2 Activation, Int. J. of Biomedical Science, 7(3), 181-190, Sep 15, 2011
Ren, X., Chang, CC, and Zhou, XB*, The network properties of Myledysplastic Syndromes pathogenesis revealed by an integrative systems biological method, Molecular BioSystems, 2011 (online: DOI: 10.1039/C1MB05018D)
Peng, HM, Wen, JG, Li, HW, Chang J, Zhou, X*, Drug Inhibition Profile Prediction for NFκB Pathway in Multiple Myeloma, Plos One, 6(3): e14750, 2011
Zhang Z, Ge Y, Zhang D, Zhou X. High-content analysis in monastrol suppressor screens. A neural network based classification approach. Methods Inf Med. 2011 May 13;50(3):265-72.
Zhang, P., Li, HQ, Wang HW, Wong STC, and Zhou X*: Peak Tree: A New Tool for Multiscale Hierarchical Representation and Peak Detection of Mass Spectrometry Data. IEEE/ACM Trans. Comput. Biology Bioinform. 2011, 8(4): 1054-1066.
Jin GX, Zhao, H, and Zhou, X, An enhanced Petri-net model to predict synergistic effects of pairwise drug combinations from gene microarray data, Bioinformatics, 2011: (2011) 27 (13): i310-i316.
Chang, YB, Xia, J, I Gateno, J, Xiong, ZX, Teichgraeber, J, Lasky, RE, Zhou, X*, In-Vitro Evaluation of a New Approach to Digital Dental Model Articulation Journal of Oral and Maxillofacial Surgery, J. of Oral and Maxillofacial Surgery, 2011.
Beck, D, Ayers, S, Wen,J, Brandl, M, Pham, T, Webb, P., Chang, CC, and Zhou, XB*, Integrative analysis of next generation sequencing for small non-coding RNAs and transcriptional regulation in Myelodysplastic Syndromes, BMC Medical Genomics, 4:19, 2011.
Jiang B, Struthers A, Zhang L, Zhou XB, and Barrens, M, Employing graphics processing unit technology, alternating direction implicit method and domain decomposition to speed up the numerical diffusion solver for the biomedical engineering research. Int. J. for Numerical Methods in Biomedical Engineering, 2011;DOI: 10.1002/cnm.
Li, Q., Zhang, Y., Zhou, X., Deng, ZG, A Global Spatial Similarity Optimization Scheme to Track Large Numbers of Dendritic Spines in Time-lapse Confocal Microscopy, IEEE Trans on Medical Imaging, 30(2): 632- 641, 2011