Sun, XQ, Bao, JG, Nelson, KC, Li, KC, Kulik, G, and Zhou, XB, Systems Modeling of Anti-apoptotic Pathways in Prostate Cancer: Psychological Stress Triggers, a Synergism Pattern Switch in Drug Combination Therapy, Plos Computational Biology, 9(12): e1003358. doi:10.1371/journal.pcbi.1003358, 2013
Wang, HY, Wen, JG, Chang CC, and Zhou, XB, Discovering Transcription and Splicing Networks in Myelodysplastic Syndromes, Plos One, DOI: 10.1371/journal.pone.0079118, 2013
Tang, L, Guo, DM, Andasari, V, Li, KS, Zhou, XB, Computational Modeling of 3D Tumor Growth and Angiogenesis for Chemotherapy Evaluation, PLoS ONE 9(1): e83962. doi:10.1371/journal.pone.0083962, 2014
Su, J, Zhang, L, Zhang, W, Choi, DS, Wen, JG, Jiang, BN, Chang, CC, and Zhou, XB, Targeting the Biophysical Properties of the Myeloma Initiating Cell Niches: A Pharmaceutical Synergism Analysis Using Multi-scale Agent-based Modeling, Plos One, accepted for publication, 2013
Shao HW, Peng T, Ji ZW, Su, J, Zhou, XB, Systematically Studying Kinase Inhibitor Induced Signaling Network Signatures by Integrating both Therapeutic and Side Effects, PLoS ONE 8(12): e80832. doi:10.1371/journal.pone.0080832, 2013
Tan, H, Kun, W, Bao, GG, and Zhou, XB, In silico study on multidrug resistance conferred by I223R/H275Y double mutant neuraminidase, Molecular Biosystems, 9(11):2764-74. doi: 10.1039/c3mb70253g, 2013
Peng, T, Choi, D, Peng, H, Su, J, Chang, CC, and Zhou, XB, Modeling Cell-Cell Interactions in Regulating Multiple Myeloma Initiating Cell Fate, IEEE Journal of Biomedical and Health Informatics, Vol. PP, No. 99, doi:10.1109/JBHI.2013.2281774, 2013
Guo, DM, and Zhou, XB, Red Blood Cells Tracking Using Optical Flow Methods, IEEE Journal of Biomedical and Health Informatics, , Vol. PP, No.99, doi:10.1109/JBHI.2013.2281915, 2013
Liu, CL, Ma, JW, Chang, CC and Zhou, XB, FusionQ: a novel approach for gene fusion detection and quantification from paired-end RNA-Seq, BMC Bioinformatics, 2013, 14:193.
Bian J, Liu C, Wang H, Xing J, Kachroo P, and Zhou, XB, SNVHMM: predicting single nucleotide variants from next generation sequencing, BMC Bioinformatics, 2013, 14:225.
Wang J., Zhang, L., Jing, CY, Ye, G., Wu, HL, Miao, HY, Wu, YK, Zhou, XB, Multi-scale agent-based modeling on melanoma and its related angiogenesis analysis, Theoretical Biology and Medical Modelling, 2013, 10: 41.
Shao, HW and Zhou, XB, A System Mathematical Model of Cell-cell Communication Network in Amyotrophic Lateral Sclerosis", Molecular BioSystems, 2013 Mar 5;9(3):398-406.
Liu GH, Deng CH,Bodin A, Sun XZ, Bharadwaj S, Zhou, XB, Wang XS, Atala A and Zhang Y. Cell injection therapy of urine derived stem cells expressing VEGF for urinary incontinence. Tissue Engineering, 2013
Sun CL, Shi Z-Z, Zhou, XB, Chen LN, and Zhao XM, Prediction of S-Glutathionylation Sites Based on Protein Sequences, Plos One, 2013; 8(2):e55512
Lin, JZ, Sieglaff, DH, Yuan, CS, Su, J, Arumanayagam, As, Firouzbakht, S, Cantu Pompa, JJ, Reynolds, FD, Zhou, XB, Cvoro, A, Webb, P, Gene Specific Actions of Thyroid Hormone Receptor Subtypes, PLoS One, 8(1):e52407, (2013)
Sun X, Kang Y, Zhang Y, Yang Y, Zhou, XB, Three-Dimensional System Modeling for Vascularized Bone Regeneration Within a Porous Biodegradable CaP Scaffold Loaded with Growth Factors, Biomaterials, 34: 4971-4981, 2013
O'Neill, BE, Vo, HQ, Shao, HW, Karmonik, C., Zhou, XB, and King C. Li, Title: MRI-based prediction of pulsed high-intensity focused ultrasound effect on tissue transport in rabbit muscle, Journal of Magnetic Resonance Imaging , 2013 Nov;38(5):1094-102.
Chang, YB, Yuan P, J Xia, Zhou, XB, “shared 3D Segmentation of Maxilla in Cone-beam Computed Tomography Imaging Using Base Invariant Wavelet Active Shape Model on Customized Two-manifold Topology, Journal of X-Ray Science and Technology, 2013;21(2):251-82.
Wang, HY and Zhou, XB, Detection and characterization of regulatory elements using graphical probabilistic models, Chinese Journal of Cancer, 2013, 4:186-194.
Fan, J, JG, Dy, Chang, CC, and Zhou, XB, Identification of SNP‐containing regulatory motifs in the myelodysplastic syndromes model using SNP arrays and gene expression arrays, Chinese Journal of Cancer, 2013, 4: 170-185
Zhou, XB, Editorial Preface: Genomic Informatics: Detection of Chromatin states, SNP-containing Motifs, and Functional Enrichment Modules, Chinese Journal of Cancer, 2013, 4:153-54.
Zhang, L. Xue, Y, Jiang, B, Wu, Y., Su, J, and Zhou, XB, Multiscale agent-based modelling of ovarian cancer progression under the stimulation of the STAT 3 pathway, Int. J. Data Mining and Bioinformatics, 9(3):235-253, 2013.
Xia, Z, Chen, W., and Chang, CQ, Zhou, XB*, A Graph-based Elastic Net for Variable Selection and Module Identification for Genomic Data Analysis, Int. Jour. of Data Mining & Bioinformatics, 8(3): 311-325 (2013)
Liu GH, Rajesh Pareta, Bharadwaj S, Zhou, XB, Liu YM, Liu H, Sun XZ, Deng CH, Opera E, Atala A and Zhang Y. Sk myogenic differentiation of USC and angiogenesis in alginate beads with VEGF for SUI. Biomaterials, 2013 Jan;34(4):1311-26.