2015

Minna Qiao,Dan Wu, MichelleCarey, Xiaobo Zhou* and Le Zhang* . Multi-scale agent-basedmultiplemyeloma cancer modeling and the related study of the balance between osteoclasts and osteoblasts. PLOS ONE,2015.

Zhang X, Tang Z, Liebschner MA, Kim D, Shen S, Chang CM, Yuan P, Zhang G, Gateno J, Zhou X, Zhang SX, and Xia JJ. An eFace-Template Method for Efficiently Generating Patient-Specific Anatomically-Detailed Facial Soft Tissue FE Models for Craniomaxillofacial Surgery Simulation. Ann Biomed Eng. 2015 Oct 13.

Jian Zhang, James J. Xia, Jianfu Li, Xiaobo Zhou, Reconstruction-based Digital Dental Occlusion of the Partially Edentulous Dentition, IEEE Journal of Biomedical and Health Informatics, accepted for publication, 2015

Liu, L; Zhao, W; Zhou, X*, Modeling Co-occupancy of Transcription Factors Using Chromatin Features, Nucleic Acids Research, accepted for publication, 2015

Xiaohua Qian, Hua Tan, Jian Zhang , Xiahai Zhuang, Leslie Branch, Chaire Sanger, Allison Thompson, Weiling Zhao, King Chuen Li, Lisa David and Xiaobo Zhou*, Objective Classification System for Sagittal Craniosynostosis based on Suture Segmentation, Medical Physics, accepted for publication, 2015

Peng, HM, Tan, H, Zhao, WL, Jin, GX, Sharma, S, Xing, F, Watabe, K, and Zhou, X*, Computational Systems Biology in Cancer Brain Metastasis,  Frontiers in Bioscience, in press, 2015

Wu, KR, Sharma, S, Suresh, Liu, KQ, Zhou, X, and Watabe, K, Non-coding RNAs in cancer brain metastasis, Frontiers in Bioscience, in press, 2015

Zhiwei Ji, Dan Wu, Weiling Zhao, Huiming Peng, Deshuang Huang, Xiaobo Zhou, Systemic modeling myeloma-osteoclast interactions under normoxic/hypoxic condition using a novel computational approach, Scientific Reports, accepted for publications, 2015

Song,Q; Wang, HY; Bao, JG; Pullikuth, Ashok; Li, K; Miller, L; Zhou, X*, Systems biology approach to studying proliferation-dependent prognostic subnetworks in breast cancer, Scientific Reports, accepted for publication, 2015

Tan, H; Bao, JG; and Zhou, X*, Genome-wide mutational spectra analysis reveals significant cancer-specific heterogeneity, Scientific Reports, accepted for publication, 2015

Liu, L; Wang, H; Wen, J; Tseng, C-E; Zu, Y.; Chang, C-C and Zhou, XB*; Mutated Genes and Driver Pathways Involved in Myelodysplastic Syndromes—A Transcriptome Sequencing Based Approach. Molecular BioSystems, 2015, 11, 2158 - 2166

Wu, K; Fukuda,K; Xing, F; Zhang, YY; Sharma, S; Liu, Y; Chan, MD; Zhou, X; Qasem, SA; Pochampally, R; Mo, YY; Watabe, K; Roles of the cyclooxygenase 2-metrix metalloproteinase 1 pathway in brain metastasis of breast cancer, Journal of Biological Chemistry, 2015 Apr 10;290(15):9842-54.

Chen, XF; Liu, L; Mims, J; Punska EC; Williams KE; Zhao WL; Arcaro KF; Tsang AW; Zhou XB* and Furdui, CM*; Analysis of DNA Methylation and Gene Expression in Radiation Resistant Head and Neck Tumors, Epigenetics, DOI:10.1080/15592294.2015.1048953, 2015

 Suresh, V ; Liu, L; Adjeroh, D; and Zhou; X*, RPI-Pred: ncRNA-protein interaction prediction using sequence and structural information; Nucleic Acids Research, 43 (3): 1370-1379., 2015 [PDF]

Wu D; Guo XY; Su J; Chen RY; Berenzon D; Guthold D; Bonin K; Zhao WL; Zhou X*,  CD138-negative myeloma cells regulate mechanical properties of bone marrow stromal cells through SDF-1/CXCR4/AKT signaling pathway, BBA - Molecular Cell Biology, 1853:2: 338-347, 2015 [PDF]

Choi, DS, Stark, DJ, Raphael, RM, Wen, JG, Su, J, Zhou, X; Chang, CC, Zhu, YL, SDF-1α stiffens myeloma bone marrow mesenchymal stromal cells through the activation of RhoA-ROCK-Myosin II, International journal of Cancer;136(5):E219-29, 2015. [PDF]

Liu, L; Jin, GX; and Zhou, X*; Modeling the relationship of epigenetic modifications to transcription factor binding, Nucleic Acids Research, 43 (8): 3873-3885, 2015 [PDF]

Liu, CL; Su, J. Yang, F; and Zhou, X*; Compound signature detection on LINCS L1000 big data, Mol. BioSyst., 2015,11, 714-722  [PDF]

Guo, DM; Li, KC, Peters TR; Snively BM; Poehling KA; and Zhou, X*, Multi-scale modeling for the transmission of influenza and the evaluation of interventions toward it, (Nature) Scientific Reports, DOI: 10.1038/srep08980, 2015 [PDF]

     

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