Genetic Analysis Resources in the Center for Public Health
Genetics Software Downloads
Genetic software is now hosted on GitHub, and can be found at the following
SNPLASH (includes SNPGWA; QSNPGWA ; Dandelion; MECPM, BADTree)
SNPDoc searches public databases for biologic information on single nucleotide
polymorphisms (SNPs). Information retrieved includes chromosome, physical
position (bases), gene (nearest gene(s)), alias(es), risk score
(fastsnp_reference pdf), and SNP function. Information is stored in a SQL database
and periodically updated. SNPDoc is also available as an executable that
includes a few extra features, including linkage disequilibrium results and the
ability to input genetic regions or positions.
Contact: Dr. Carl D. Langefeld,
Dr. David McWilliams, and John Beal.