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Sun, XQ, Bao, JG, Nelson, KC, Li, KC, Kulik, G, and Zhou, XB, Systems Modeling of Anti-apoptotic Pathways in Prostate Cancer: Psychological Stress Triggers, a Synergism Pattern Switch in Drug Combination Therapy, Plos Computational Biology, 9(12): e1003358. doi:10.1371/journal.pcbi.1003358, 2013 [PDF]

Wang, HY, Wen, JG, Chang CC, and Zhou, XB, Discovering Transcription and Splicing Networks in Myelodysplastic Syndromes, Plos One, DOI: 10.1371/journal.pone.0079118, 2013 [PDF]

Shao HW, Peng T, Ji ZW, Su, J, Zhou, XB, Systematically Studying Kinase Inhibitor Induced Signaling Network Signatures by Integrating both Therapeutic and Side Effects, PLoS ONE 8(12): e80832. doi:10.1371/journal.pone.0080832, 2013 [PDF]

Tan, H, Kun, W, Bao, GG, and Zhou, XB, In silico study on multidrug resistance conferred by I223R/H275Y double mutant neuraminidase, Molecular Biosystems, 9(11):2764-74. doi: 10.1039/c3mb70253g, 2013 [PDF]

Peng, T, Choi, D, Peng, H, Su, J, Chang, CC, and Zhou, XB, Modeling Cell-Cell Interactions in Regulating Multiple Myeloma Initiating Cell Fate, IEEE Journal of Biomedical and Health Informatics, Vol. PP, No. 99, doi:10.1109/JBHI.2013.2281774, 2013 [PDF]

Guo, DM, and Zhou, XB, Red Blood Cells Tracking Using Optical Flow Methods, IEEE Journal of Biomedical and Health Informatics, , Vol. PP, No.99, doi:10.1109/JBHI.2013.2281915, 2013 [PDF]

Liu, CL, Ma, JW, Chang, CC and Zhou, XB, FusionQ: a novel approach for gene fusion detection and quantification from paired-end RNA-Seq, BMC Bioinformatics, 2013, 14:193. [PDF]

Bian J, Liu C, Wang H, Xing J, Kachroo P, and Zhou, XB, SNVHMM: predicting single nucleotide variants from next generation sequencing, BMC Bioinformatics, 2013, 14:225. [PDF]

Wang J., Zhang, L., Jing, CY, Ye, G., Wu, HL, Miao, HY, Wu, YK, Zhou, XB, Multi-scale agent-based modeling on melanoma and its related angiogenesis analysis, Theoretical Biology and Medical Modelling, 2013, 10: 41. [PDF]

Shao, HW and Zhou, XB, A System Mathematical Model of Cell-cell Communication Network in Amyotrophic Lateral Sclerosis", Molecular BioSystems, 2013 Mar 5;9(3):398-406.

Liu GH, Deng CH,Bodin A, Sun XZ, Bharadwaj S, Zhou, XB, Wang XS, Atala A and Zhang Y. Cell injection therapy of urine derived stem cells expressing VEGF for urinary incontinence. Tissue Engineering, 2013

Sun CL, Shi Z-Z, Zhou, XB, Chen LN, and Zhao XM, Prediction of S-Glutathionylation Sites Based on Protein Sequences, Plos One, 2013; 8(2):e55512 [PDF]

Lin, JZ, Sieglaff, DH, Yuan, CS, Su, J, Arumanayagam, As, Firouzbakht, S, Cantu Pompa, JJ, Reynolds, FD, Zhou, XB, Cvoro, A, Webb, P, Gene Specific Actions of Thyroid Hormone Receptor Subtypes, PLoS One, 8(1):e52407, (2013) [PDF]

Sun X, Kang Y, Zhang Y, Yang Y, Zhou, XB, Modeling vascularized Bone regeneration within a porous biodegradable CaP scaffold loaded with growth factors, Biomaterials, 34: 4971-4981, 2013 [PDF]

O'Neill, BE, Vo, HQ, Shao, HW, Karmonik, C., Zhou, XB, and King C. Li, Title: MRI-based prediction of pulsed high-intensity focused ultrasound effect on tissue transport in rabbit muscle, Journal of Magnetic Resonance Imaging , 2013 Nov;38(5):1094-102. [PDF]

Chang, YB, Yuan P, J Xia, Zhou, XB, “shared 3D Segmentation of Maxilla in Cone-beam Computed Tomography Imaging Using Base Invariant Wavelet Active Shape Model on Customized Two-manifold Topology, Journal of X-Ray Science and Technology, 2013;21(2):251-82. [PDF]

Wang, HY and Zhou, XB, Detection and characterization of regulatory elements using probabilistic conditional random field and hidden Markov models , Chinese Journal of Cancer, 2013, 4:186-194.[PDF]

Fan, J, JG, Dy, Chang, CC, and Zhou, XB, Identification of SNP‐containing regulatory motifs in the myelodysplastic syndromes model using SNP arrays and gene expression arrays, Chinese Journal of Cancer, 2013, 4: 170-185 [PDF]

Zhou, XB, Editorial Preface: Cancer bioinformatics: Detection of Chromatin states, SNP-containing Motifs, and Functional Enrichment Modules, Chinese Journal of Cancer, 2013, 4:153-54. [PDF]

Zhang, L. Xue, Y, Jiang, B, Wu, Y., Su, J, and Zhou, XB, Multiscale agent-based modelling of ovarian cancer progression under the stimulation of the STAT 3 pathway, Int. J. Data Mining and Bioinformatics, 9(3):235-253, 2013.

Xia, Z, Chen, W., and Chang, CQ, Zhou, XB*, A Graph-based Elastic Net for Variable Selection and Module Identification for Genomic Data Analysis, Int. Jour. of Data Mining & Bioinformatics, 8(3): 311-325 (2013)

Liu GH, Rajesh Pareta, Bharadwaj S, Zhou, XB, Liu YM, Liu H, Sun XZ, Deng CH, Opera E, Atala A and Zhang Y. Skeletal myogenic differentiation of Urine-derived stem cells and angiogenesis using microbeads loaded with growth factors. Biomaterials, 2013 Jan;34(4):1311-26.  [PDF]


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